No. words: 1051; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:512)  478  0.40 0.20 0.00  MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1        1   500 (0)  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   (37)   514    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   551 
   67    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1    29 
   71  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   481 
   91    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1    53 
  128  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   424 
  140    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   102 
  144  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   408 
  152    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   114 
  172  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   380 
  176    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   138 
  342  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   210 
  350    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   312 
  378  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   174 
  390    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   352 
  426  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   126 
  438    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   400 
  450  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1   102 
  514    MoSU033F_D01_BE490219Td04P024C10P015G071F1_009.ab1   476 
  526  C MoSU033R_D01_BE490219Td04P024C10P015G071R1_009.ab1    26 
Contig length: old 551, new 551

Contig length: old 551, new 551
New start: 0