No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:612)  592  0.00 0.00 0.16  MoSU033F_D04_BE490219Td04P024E10P015G071F1_026.ab1        1   613 (41)  C MoSU033R_D04_BE490219Td04P024E10P015G071R1_026.ab1   (47)   612     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU033R_D04_BE490219Td04P024E10P015G071R1_026.ab1   659 
  127    MoSU033F_D04_BE490219Td04P024E10P015G071F1_026.ab1    80 
  163  C MoSU033R_D04_BE490219Td04P024E10P015G071R1_026.ab1   497 
  175    MoSU033F_D04_BE490219Td04P024E10P015G071F1_026.ab1   128 
  251  C MoSU033R_D04_BE490219Td04P024E10P015G071R1_026.ab1   409 
  503    MoSU033F_D04_BE490219Td04P024E10P015G071F1_026.ab1   456 
  563  C MoSU033R_D04_BE490219Td04P024E10P015G071R1_026.ab1    97 
  579    MoSU033F_D04_BE490219Td04P024E10P015G071F1_026.ab1   532 
Contig length: old 700, new 701

Contig length: old 701, new 701
New start: 0