No. words: 1106; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:509)  479  0.39 0.59 0.00  MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1        1   509 (51)  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   (34)   512     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   546 
   87    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1    50 
  126  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   421 
  146    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   109 
  150  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   397 
  158    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   121 
  196  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   351 
  200    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   163 
  312  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1   235 
  388    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   351 
  460  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1    87 
  464    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   427 
  468  C MoSU033R_E01_BE490219Td05P024C10P015G071R1_007.ab1    79 
  484    MoSU033F_E01_BE490219Td05P024C10P015G071F1_007.ab1   447 
Contig length: old 596, new 597

Contig length: old 597, new 597
New start: 0