No. words: 1112; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:511)  486  0.39 0.39 0.00  MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1        1   511 (51)  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   (37)   513     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   550 
   93    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1    54 
  134  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   417 
  154    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   115 
  212  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   339 
  216    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   177 
  240  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   311 
  248    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   209 
  316  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   235 
  392    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   353 
  444  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1   107 
  448    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   409 
  464  C MoSU033R_F01_BE490219Td06P024C10P015G071R1_005.ab1    87 
  480    MoSU033F_F01_BE490219Td06P024C10P015G071F1_005.ab1   441 
Contig length: old 600, new 601

Contig length: old 601, new 601
New start: 0