No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:612)  596  0.00 0.00 0.00  MoSU033F_F04_BE490219Td06P024E10P015G071F1_022.ab1        1   613 (45)  C MoSU033R_F04_BE490219Td06P024E10P015G071R1_022.ab1   (50)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU033R_F04_BE490219Td06P024E10P015G071R1_022.ab1   663 
  506    MoSU033F_F04_BE490219Td06P024E10P015G071F1_022.ab1   456 
  562  C MoSU033R_F04_BE490219Td06P024E10P015G071R1_022.ab1   102 
  574    MoSU033F_F04_BE490219Td06P024E10P015G071F1_022.ab1   524 
  602  C MoSU033R_F04_BE490219Td06P024E10P015G071R1_022.ab1    62 
  606    MoSU033F_F04_BE490219Td06P024E10P015G071F1_022.ab1   556 
Contig length: old 708, new 708

Contig length: old 708, new 708
New start: 0