No. words: 1112; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:509)  475  0.39 0.59 0.20  MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1        1   510 (52)  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1   (38)   512     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1   550 
   92    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1    51 
  135  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1   416 
  143    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1   102 
  147  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1   404 
  151    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1   110 
  317  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1   234 
  393    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1   352 
  465  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1    86 
  469    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1   428 
  473  C MoSU033R_G01_BE490219Td07P024C10P015G071R1_003.ab1    78 
  481    MoSU033F_G01_BE490219Td07P024C10P015G071F1_003.ab1   440 
Contig length: old 602, new 603

Contig length: old 603, new 603
New start: 0