No. words: 1108; after pruning: 1054


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:508)  479  0.39 0.59 0.00  MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1        1   508 (52)  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1   (37)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1   548 
   85    MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1    45 
  132  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1   417 
  136    MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1    96 
  144  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1   405 
  152    MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1   112 
  314  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1   235 
  390    MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1   350 
  450  C MoSU033R_H01_BE490219Td08P024C10P015G071R1_001.ab1    99 
  478    MoSU033F_H01_BE490219Td08P024C10P015G071F1_001.ab1   438 
Contig length: old 599, new 600

Contig length: old 600, new 600
New start: 0