No. words: 1296; after pruning: 1270


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:615)  593  0.32 0.00 0.00  MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1        1   616 (18)  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   (46)   616     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   662 
  178    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   132 
  194  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   469 
  222    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   176 
  314  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   349 
  326    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   280 
  430  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   233 
  474    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   428 
  502  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   161 
  506    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   460 
  514  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1   149 
  578    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   532 
  582  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1    81 
  610    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   564 
  622  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1    41 
  630    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   584 
  634  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1    29 
  642    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   596 
  646  C MoSU033R_A05_BE490219Td09P024E10P015G071R1_047.ab1    17 
  654    MoSU033F_A05_BE490219Td09P024E10P015G071F1_047.ab1   608 
Contig length: old 680, new 680

Contig length: old 680, new 680
New start: 0