No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.3 (1,1:799)  343  0.00 0.00 0.00  MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1      114   463 (3)  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   (0)   687   338 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1    MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1     1 
  157  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   644 
  165    MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1   165 
  173  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   628 
  177    MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1   177 
  193  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   608 
  197    MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1   197 
  209  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   592 
  229    MoSU010F_A05_BE490219Tu01P018H01P018H071F1_047.ab1   229 
  233  C MoSU010R_A05_BE490219Tu01P018H01P018H071R1_047.ab1   568 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0