No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:816)  664  0.00 0.15 0.00  MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1        1   684 (0)  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   (22)   818   134 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   840 
   40    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1    17 
   60  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   781 
   64    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1    41 
   96  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   745 
  100    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1    77 
  192  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   649 
  200    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   177 
  240  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   601 
  252    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   229 
  260  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   581 
  316    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   293 
  328  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   513 
  400    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   377 
  404  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   437 
  488    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   465 
  492  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   349 
  536    MoSU010F_B05_BE490219Tu02P018H01P018H071F1_045.ab1   513 
  540  C MoSU010R_B05_BE490219Tu02P018H01P018H071R1_045.ab1   301 
Contig length: old 840, new 840

Contig length: old 840, new 840
New start: 0