No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:628)  608  0.00 0.00 0.00  MoSU024F_C11_BE493868As01P019C06P019C121F1_091.ab1        1   629 (44)  C MoSU024R_C11_BE493868As01P019C06P019C121R1_091.ab1   (38)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C MoSU024R_C11_BE493868As01P019C06P019C121R1_091.ab1   667 
   96    MoSU024F_C11_BE493868As01P019C06P019C121F1_091.ab1    58 
  104  C MoSU024R_C11_BE493868As01P019C06P019C121R1_091.ab1   564 
  128    MoSU024F_C11_BE493868As01P019C06P019C121F1_091.ab1    90 
  136  C MoSU024R_C11_BE493868As01P019C06P019C121R1_091.ab1   532 
  528    MoSU024F_C11_BE493868As01P019C06P019C121F1_091.ab1   490 
  628  C MoSU024R_C11_BE493868As01P019C06P019C121R1_091.ab1    40 
  640    MoSU024F_C11_BE493868As01P019C06P019C121F1_091.ab1   602 
Contig length: old 711, new 711

Contig length: old 711, new 711
New start: 0