No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:630)  608  0.00 0.16 0.00  MoSU024F_E11_BE493868At01P019C06P019C121F1_087.ab1        1   631 (30)  C MoSU024R_E11_BE493868At01P019C06P019C121R1_087.ab1   (40)   632     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C MoSU024R_E11_BE493868At01P019C06P019C121R1_087.ab1   672 
  132    MoSU024F_E11_BE493868At01P019C06P019C121F1_087.ab1    91 
  140  C MoSU024R_E11_BE493868At01P019C06P019C121R1_087.ab1   533 
  220    MoSU024F_E11_BE493868At01P019C06P019C121F1_087.ab1   179 
  616  C MoSU024R_E11_BE493868At01P019C06P019C121R1_087.ab1    57 
  640    MoSU024F_E11_BE493868At01P019C06P019C121F1_087.ab1   599 
Contig length: old 702, new 702

Contig length: old 702, new 702
New start: 0