No. words: 1336; after pruning: 1310


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.8 (1,1:635)  609  0.00 0.00 0.16  MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1        3   636 (31)  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   (36)   633     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   669 
   84    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1    50 
  108  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   562 
  132    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1    98 
  136  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   534 
  152    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1   118 
  156  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   514 
  172    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1   138 
  188  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1   482 
  220    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1   186 
  616  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1    54 
  632    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1   598 
  636  C MoSU024R_F11_BE493868At02P019C06P019C121R1_085.ab1    34 
  644    MoSU024F_F11_BE493868At02P019C06P019C121F1_085.ab1   610 
Contig length: old 700, new 701

Contig length: old 701, new 701
New start: 0