No. words: 1566; after pruning: 1540


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:636)  615  0.16 0.00 0.00  MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1        1   637 (153)  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1   (139)   637     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1   776 
  282    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   143 
  286  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1   491 
  494    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   355 
  522  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1   255 
  606    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   467 
  690  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1    87 
  706    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   567 
  714  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1    63 
  754    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   615 
  758  C MoSU024R_C12_BE493868Ld04P019C06P019C121R1_092.ab1    19 
  762    MoSU024F_C12_BE493868Ld04P019C06P019C121F1_092.ab1   623 
Contig length: old 929, new 929

Contig length: old 929, new 929
New start: 0