No. words: 612; after pruning: 586


Histogram of relative pair offsets, for read pairs with multiple alignments:
33    18
66    16
99    56

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.0 (1,1:-87)  132  9.63 0.00 0.00  MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1        1   187 (146)    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1       88   274 (5) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1     1 
   91    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1     4 
   95    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1    95 
  119    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1    32 
  131    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1   131 
  135    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1    48 
  139    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1   139 
  147    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1    60 
  166    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1   166 
  179    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1    92 
  199    MoSU024R_E12_BE493868Ld06P019C06P019C121R1_088.ab1   199 
  212    MoSU024F_E12_BE493868Ld06P019C06P019C121F1_088.ab1   125 
Contig length: old 420, new 420

Contig length: old 420, new 420
New start: 0 
S Change at: 175; seg lengths: entry 1, contig 1
S Change at: 261; seg lengths: entry 2, contig 2