No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:634)  610  0.00 0.16 0.00  MoSU024F_A11_BE493868Tu01P019C06P019C121F1_095.ab1        1   635 (28)  C MoSU024R_A11_BE493868Tu01P019C06P019C121R1_095.ab1   (38)   636     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C MoSU024R_A11_BE493868Tu01P019C06P019C121R1_095.ab1   674 
  167    MoSU024F_A11_BE493868Tu01P019C06P019C121F1_095.ab1   128 
  171  C MoSU024R_A11_BE493868Tu01P019C06P019C121R1_095.ab1   504 
  231    MoSU024F_A11_BE493868Tu01P019C06P019C121F1_095.ab1   192 
  615  C MoSU024R_A11_BE493868Tu01P019C06P019C121R1_095.ab1    60 
  627    MoSU024F_A11_BE493868Tu01P019C06P019C121F1_095.ab1   588 
Contig length: old 702, new 702

Contig length: old 702, new 702
New start: 0