No. words: 1097; after pruning: 1071


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:500)  497  0.20 0.00 0.00  MoSU009F_C05_BE493897As01P015E01P015E071F1_043.ab1        1   501 (43)  C MoSU009R_C05_BE493897As01P015E01P015E071R1_043.ab1   (52)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU009R_C05_BE493897As01P015E01P015E071R1_043.ab1   553 
  120    MoSU009F_C05_BE493897As01P015E01P015E071F1_043.ab1    68 
  124  C MoSU009R_C05_BE493897As01P015E01P015E071R1_043.ab1   430 
  144    MoSU009F_C05_BE493897As01P015E01P015E071F1_043.ab1    92 
  148  C MoSU009R_C05_BE493897As01P015E01P015E071R1_043.ab1   406 
  196    MoSU009F_C05_BE493897As01P015E01P015E071F1_043.ab1   144 
  220  C MoSU009R_C05_BE493897As01P015E01P015E071R1_043.ab1   334 
  252    MoSU009F_C05_BE493897As01P015E01P015E071F1_043.ab1   200 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0