No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:500)  500  0.00 0.00 0.00  MoSU009F_D05_BE493897As02P015E01P015E071F1_041.ab1        1   501 (47)  C MoSU009R_D05_BE493897As02P015E01P015E071R1_041.ab1   (47)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C MoSU009R_D05_BE493897As02P015E01P015E071R1_041.ab1   548 
  115    MoSU009F_D05_BE493897As02P015E01P015E071F1_041.ab1    68 
  123  C MoSU009R_D05_BE493897As02P015E01P015E071R1_041.ab1   426 
  139    MoSU009F_D05_BE493897As02P015E01P015E071F1_041.ab1    92 
  143  C MoSU009R_D05_BE493897As02P015E01P015E071R1_041.ab1   406 
  259    MoSU009F_D05_BE493897As02P015E01P015E071F1_041.ab1   212 
Contig length: old 595, new 595

Contig length: old 595, new 595
New start: 0