No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   25    0.0 6.4 (1,1:496)  445  0.85 0.00 0.43  MoSU009F_E05_BE493897At01P015E01P015E071F1_039.ab1       32   499 (43)  C MoSU009R_E05_BE493897At01P015E01P015E071R1_039.ab1   (25)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
25       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1    MoSU009F_E05_BE493897At01P015E01P015E071F1_039.ab1     1 
  439  C MoSU009R_E05_BE493897At01P015E01P015E071R1_039.ab1    59 
  443    MoSU009F_E05_BE493897At01P015E01P015E071F1_039.ab1   443 
  463  C MoSU009R_E05_BE493897At01P015E01P015E071R1_039.ab1    35 
  471    MoSU009F_E05_BE493897At01P015E01P015E071F1_039.ab1   471 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0