No. words: 1065; after pruning: 1039


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:476)  459  0.84 0.21 0.00  MoSU010F_E03_BE493897At01P018F01P018F071F1_023.ab1        1   476 (67)  C MoSU010R_E03_BE493897At01P018F01P018F071R1_023.ab1   (45)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C MoSU010R_E03_BE493897At01P018F01P018F071R1_023.ab1   522 
   53    MoSU010F_E03_BE493897At01P018F01P018F071F1_023.ab1     8 
   57  C MoSU010R_E03_BE493897At01P018F01P018F071R1_023.ab1   466 
   61    MoSU010F_E03_BE493897At01P018F01P018F071F1_023.ab1    16 
Contig length: old 588, new 588

Contig length: old 588, new 588
New start: 0