No. words: 1090; after pruning: 1064


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:494)  430  0.00 0.00 0.00  MoSU009F_H05_BE493897Ld02P015E01P015E071F1_033.ab1        1   432 (0)  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1   (163)   495    64 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1   658 
  327    MoSU009F_H05_BE493897Ld02P015E01P015E071F1_033.ab1   164 
  331  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1   328 
  411    MoSU009F_H05_BE493897Ld02P015E01P015E071F1_033.ab1   248 
  415  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1   244 
  519    MoSU009F_H05_BE493897Ld02P015E01P015E071F1_033.ab1   356 
  523  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1   136 
  567    MoSU009F_H05_BE493897Ld02P015E01P015E071F1_033.ab1   404 
  571  C MoSU009R_H05_BE493897Ld02P015E01P015E071R1_033.ab1    88 
Contig length: old 658, new 658

Contig length: old 658, new 658
New start: 0