No. words: 854; after pruning: 828


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.0 -2.0 (1,1:481)  103  8.57 0.00 2.86  MoSU009F_C06_BE493897Ld05P015E01P015E071F1_044.ab1        1   175 (0)  C MoSU009R_C06_BE493897Ld05P015E01P015E071R1_044.ab1   (200)   479   310 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  2       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1  C MoSU009R_C06_BE493897Ld05P015E01P015E071R1_044.ab1   679 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0