No. words: 778; after pruning: 752


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.8 (1,1:335)  300  2.99 0.30 0.00  MoSU027F_A05_BE493897Td09P030D10P018F071F1_047.ab1        2   335 (68)  C MoSU027R_A05_BE493897Td09P030D10P018F071R1_047.ab1   (40)   335     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C MoSU027R_A05_BE493897Td09P030D10P018F071R1_047.ab1   375 
   44    MoSU027F_A05_BE493897Td09P030D10P018F071F1_047.ab1     5 
   73  C MoSU027R_A05_BE493897Td09P030D10P018F071R1_047.ab1   303 
   77    MoSU027F_A05_BE493897Td09P030D10P018F071F1_047.ab1    38 
   81  C MoSU027R_A05_BE493897Td09P030D10P018F071R1_047.ab1   295 
   97    MoSU027F_A05_BE493897Td09P030D10P018F071F1_047.ab1    58 
Contig length: old 442, new 442

Contig length: old 442, new 442
New start: 0 
S Change at: 128; seg lengths: entry 1, contig 1