No. words: 1259; after pruning: 1233


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:574)  567  0.17 0.00 0.00  MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1        1   575 (31)  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   (78)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   653 
   82    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1     4 
   86  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   568 
   98    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1    20 
  114  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   540 
  118    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1    40 
  238  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   416 
  242    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   164 
  250  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   404 
  254    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   176 
  262  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   392 
  270    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   192 
  310  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   344 
  318    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   240 
  338  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   316 
  398    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   320 
  402  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   252 
  422    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   344 
  430  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   224 
  434    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   356 
  438  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1   216 
  606    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   528 
  610  C MoSU005R_B05_BE494028As01P015F02F081R1_041.ab1    44 
  650    MoSU005F_B05_BE494028As01P015F02F081F1_041.ab1   572 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0