No. words: 1270; after pruning: 1244


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:639)  594  0.49 0.00 0.00  MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1        1   609 (0)  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   (21)   640    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   661 
   25    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1     4 
   33  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   629 
   53    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1    32 
   65  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   597 
   78    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1    57 
  102  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   560 
  106    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1    85 
  126  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   536 
  134    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   113 
  234  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   428 
  242    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   221 
  302  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   360 
  310    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   289 
  322  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   340 
  330    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   309 
  354  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   308 
  370    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   349 
  374  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   288 
  422    MoSU005F_C05_BE494028As02P015F02F081F1_034.ab1   401 
  426  C MoSU005R_C05_BE494028As02P015F02F081R1_034.ab1   236 
Contig length: old 661, new 661

Contig length: old 661, new 661
New start: 0