No. words: 1352; after pruning: 1326


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:691)  636  0.31 0.15 0.00  MoSU005F_E05_BE494028At02P015F02F081F1_035.ab1        1   650 (0)  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   (10)   692    42 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   702 
   14    MoSU005F_E05_BE494028At02P015F02F081F1_035.ab1     4 
   18  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   685 
   29    MoSU005F_E05_BE494028At02P015F02F081F1_035.ab1    19 
  340  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   362 
  384    MoSU005F_E05_BE494028At02P015F02F081F1_035.ab1   374 
  388  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   314 
  428    MoSU005F_E05_BE494028At02P015F02F081F1_035.ab1   418 
  432  C MoSU005R_E05_BE494028At02P015F02F081R1_035.ab1   270 
Contig length: old 702, new 701

Contig length: old 701, new 701
New start: 0