No. words: 1542; after pruning: 1516


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.8 (1,1:730)  677  0.14 0.00 0.14  MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1        5   694 (0)  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   (122)   726    38 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   848 
  130    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1    12 
  138  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   711 
  148    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1    30 
  216  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   633 
  220    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   102 
  316  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   533 
  324    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   206 
  348  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   501 
  352    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   234 
  408  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   441 
  424    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   306 
  428  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   421 
  432    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   314 
  448  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   401 
  524    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   406 
  528  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   321 
  540    MoSU005F_G05_BE494028Ld02P015F02F081F1_036.ab1   422 
  544  C MoSU005R_G05_BE494028Ld02P015F02F081R1_036.ab1   305 
Contig length: old 848, new 848

Contig length: old 848, new 848
New start: 0