No. words: 1651; after pruning: 1625


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.8 (1,1:699)  683  0.14 0.00 0.14  MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1        1   698 (134)  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   (120)   699     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   819 
  128    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1     8 
  136  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   684 
  154    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1    34 
  250  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   570 
  266    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   146 
  334  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   486 
  338    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   218 
  346  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   474 
  350    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   230 
  362  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   458 
  366    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   246 
  378  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   442 
  382    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   262 
  402  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   418 
  414    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   294 
  422  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   398 
  434    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   314 
  458  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   362 
  502    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   382 
  514  C MoSU005R_B06_BE494028Ld05P015F02F081R1_045.ab1   306 
  794    MoSU005F_B06_BE494028Ld05P015F02F081F1_045.ab1   674 
Contig length: old 951, new 952

Contig length: old 952, new 952
New start: 0