No. words: 1508; after pruning: 1468


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:694)  670  0.43 0.00 0.29  MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1        1   695 (88)  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   (32)   693     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   725 
   40    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1     8 
   48  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   678 
   65    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1    34 
   69  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   657 
   73    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1    42 
  141  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   585 
  149    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   118 
  153  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   573 
  161    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   130 
  193  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   533 
  197    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   166 
  209  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   517 
  221    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   190 
  229  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   497 
  237    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   206 
  245  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1   481 
  666    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   635 
  670  C MoSU005R_D06_BE494028Ld07P015F02F081R1_046.ab1    56 
  706    MoSU005F_D06_BE494028Ld07P015F02F081F1_046.ab1   675 
Contig length: old 813, new 814

Contig length: old 814, new 814
New start: 0