No. words: 1573; after pruning: 1547


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 13.2 (1,1:697)  675  0.14 0.14 0.00  MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1        2   691 (80)  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   (104)   698     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   802 
  127    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1    23 
  139  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   664 
  151    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1    47 
  215  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   588 
  219    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   115 
  279  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   524 
  283    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   179 
  335  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   468 
  339    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   235 
  363  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   440 
  367    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   263 
  403  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   400 
  423    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   319 
  427  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   376 
  443    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   339 
  455  C MoSU005R_F06_BE494028Ld09P015F02F081R1_047.ab1   348 
  791    MoSU005F_F06_BE494028Ld09P015F02F081F1_047.ab1   687 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0