No. words: 1206; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.4 (1,1:567)  525  1.41 0.18 0.35  MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1        1   566 (39)  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   (33)   568     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   601 
   68    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1    34 
   72  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   530 
   80    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1    46 
   99  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   503 
  103    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1    69 
  107  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   495 
  111    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1    77 
  131  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   471 
  231    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1   197 
  239  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   363 
  247    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1   213 
  251  C MoSU033R_E08_BE494028Ta13P015F02P024E111R1_056.ab1   351 
  574    MoSU033F_E08_BE494028Ta13P015F02P024E111F1_056.ab1   540 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0 
S Change at: 580; seg lengths: entry 1, contig 1