No. words: 1213; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.6 (1,1:564)  539  0.36 0.36 0.18  MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1        1   562 (48)  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   (37)   566     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   603 
   60    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1    21 
   99  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   505 
  231    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   192 
  251  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   353 
  343    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   304 
  355  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   249 
  495    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   456 
  499  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1   105 
  507    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   468 
  511  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1    93 
  519    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   480 
  523  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1    81 
  547    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   508 
  551  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1    53 
  555    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   516 
  559  C MoSU033R_E09_BE494028Ta21P015F02P024E111R1_071.ab1    45 
  571    MoSU033F_E09_BE494028Ta21P015F02P024E111F1_071.ab1   532 
Contig length: old 648, new 649

Contig length: old 649, new 649
New start: 0