No. words: 1188; after pruning: 1162


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:549)  526  0.55 0.36 0.00  MoSU033F_A07_BE494028Td01P015F02P024E111F1_063.ab1        1   549 (56)  C MoSU033R_A07_BE494028Td01P015F02P024E111R1_063.ab1   (32)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C MoSU033R_A07_BE494028Td01P015F02P024E111R1_063.ab1   583 
   59    MoSU033F_A07_BE494028Td01P015F02P024E111F1_063.ab1    25 
   80  C MoSU033R_A07_BE494028Td01P015F02P024E111R1_063.ab1   504 
   92    MoSU033F_A07_BE494028Td01P015F02P024E111F1_063.ab1    58 
   96  C MoSU033R_A07_BE494028Td01P015F02P024E111R1_063.ab1   488 
  572    MoSU033F_A07_BE494028Td01P015F02P024E111F1_063.ab1   538 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0 
S Change at: 579; seg lengths: entry 1, contig 1