No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 6.0 (1,1:573)  539  0.53 0.35 0.18  MoSU033F_B07_BE494028Td02P015F02P024E111F1_061.ab1        7   572 (39)  C MoSU033R_B07_BE494028Td02P015F02P024E111R1_061.ab1   (32)   569     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C MoSU033R_B07_BE494028Td02P015F02P024E111R1_061.ab1   601 
   59    MoSU033F_B07_BE494028Td02P015F02P024E111F1_061.ab1    31 
   96  C MoSU033R_B07_BE494028Td02P015F02P024E111R1_061.ab1   506 
  228    MoSU033F_B07_BE494028Td02P015F02P024E111F1_061.ab1   200 
  236  C MoSU033R_B07_BE494028Td02P015F02P024E111R1_061.ab1   366 
  546    MoSU033F_B07_BE494028Td02P015F02P024E111F1_061.ab1   518 
  550  C MoSU033R_B07_BE494028Td02P015F02P024E111R1_061.ab1    52 
  582    MoSU033F_B07_BE494028Td02P015F02P024E111F1_061.ab1   554 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0