No. words: 1186; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:549)  528  0.55 0.36 0.00  MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1        1   549 (56)  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1   (30)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1   581 
   61    MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1    29 
   70  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1   512 
  272    MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1   240 
  276  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1   306 
  456    MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1   424 
  460  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1   122 
  544    MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1   512 
  548  C MoSU033R_C07_BE494028Td03P015F02P024E111R1_059.ab1    34 
  576    MoSU033F_C07_BE494028Td03P015F02P024E111F1_059.ab1   544 
Contig length: old 636, new 637

Contig length: old 637, new 637
New start: 0 
S Change at: 82; seg lengths: entry 3, contig 3