No. words: 1199; after pruning: 1159


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:561)  539  0.54 0.00 0.18  MoSU033F_G07_BE494028Td07P015F02P024E111F1_051.ab1        4   560 (37)  C MoSU033R_G07_BE494028Td07P015F02P024E111R1_051.ab1   (44)   558     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C MoSU033R_G07_BE494028Td07P015F02P024E111R1_051.ab1   602 
   64    MoSU033F_G07_BE494028Td07P015F02P024E111F1_051.ab1    23 
   73  C MoSU033R_G07_BE494028Td07P015F02P024E111R1_051.ab1   530 
  107    MoSU033F_G07_BE494028Td07P015F02P024E111F1_051.ab1    66 
  111  C MoSU033R_G07_BE494028Td07P015F02P024E111R1_051.ab1   492 
  495    MoSU033F_G07_BE494028Td07P015F02P024E111F1_051.ab1   454 
  499  C MoSU033R_G07_BE494028Td07P015F02P024E111R1_051.ab1   104 
  571    MoSU033F_G07_BE494028Td07P015F02P024E111F1_051.ab1   530 
Contig length: old 637, new 638

Contig length: old 638, new 638
New start: 0 
S Change at: 85; seg lengths: entry 3, contig 3