No. words: 1211; after pruning: 1171


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.4 (1,1:568)  530  1.25 0.36 0.00  MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1        1   562 (46)  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   (33)   570     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   603 
   64    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1    29 
   77  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   527 
   81    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1    46 
   99  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   505 
  115    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1    80 
  123  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   481 
  135    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   100 
  139  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   465 
  163    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   128 
  167  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   437 
  203    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   168 
  215  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   389 
  231    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   196 
  235  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   369 
  247    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   212 
  251  C MoSU033R_A08_BE494028Td09P015F02P024E111R1_064.ab1   353 
  588    MoSU033F_A08_BE494028Td09P015F02P024E111F1_064.ab1   553 
Contig length: old 642, new 643

Contig length: old 643, new 643
New start: 0