No. words: 1490; after pruning: 1436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:706)  678  0.28 0.42 0.14  MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1        2   707 (55)  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   (20)   708     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   728 
   47    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1    25 
   63  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   666 
   71    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1    49 
  115  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   614 
  123    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   101 
  135  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   594 
  139    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   117 
  151  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   578 
  163    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   141 
  203  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   526 
  207    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   185 
  235  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   494 
  243    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   221 
  275  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   454 
  279    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   257 
  327  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   402 
  335    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   313 
  343  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   386 
  351    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   329 
  363  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   366 
  367    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   345 
  403  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   326 
  407    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   385 
  415  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   314 
  423    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   401 
  451  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   278 
  475    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   453 
  479  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   250 
  531    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   509 
  539  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   190 
  587    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   565 
  591  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   138 
  599    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   577 
  611  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   118 
  619    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   597 
  627  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1   102 
  660    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   638 
  664  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1    65 
  711    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   690 
  715  C MoSU035R_E05_BE495325At01P019C04P019C101R1_039.ab1    14 
  723    MoSU035F_E05_BE495325At01P019C04P019C101F1_039.ab1   702 
Contig length: old 783, new 783

Contig length: old 783, new 783
New start: 0