No. words: 1502; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.6 (1,1:716)  698  0.42 0.00 0.00  MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1        3   717 (50)  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   (20)   715     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   735 
   24    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1     6 
   28  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   708 
   52    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1    34 
   64  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   672 
   80    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1    62 
   84  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   652 
   92    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1    74 
   96  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   640 
  108    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1    90 
  112  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   624 
  132    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   114 
  136  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   600 
  144    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   126 
  156  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   580 
  172    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   154 
  180  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   556 
  216    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   198 
  224  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   512 
  228    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   210 
  232  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   504 
  240    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   222 
  276  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   460 
  292    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   274 
  300  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   436 
  344    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   326 
  356  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1   380 
  672    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   654 
  680  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1    56 
  688    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   670 
  697  C MoSU035R_F05_BE495325At02P019C04P019C101R1_037.ab1    39 
  731    MoSU035F_F05_BE495325At02P019C04P019C101F1_037.ab1   713 
Contig length: old 785, new 785

Contig length: old 785, new 785
New start: 0