No. words: 1634; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.3 (1,1:722)  665  1.67 0.28 0.14  MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1        1   720 (43)  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1   (147)   724     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1   871 
  178    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1    29 
  182  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1   690 
  209    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1    60 
  213  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1   659 
  217    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1    68 
  221  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1   651 
  779    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1   630 
  789  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1    83 
  793    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1   644 
  797  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1    75 
  813    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1   664 
  831  C MoSU035R_H05_BE495325Ld02P019C04P019C101R1_033.ab1    41 
  862    MoSU035F_H05_BE495325Ld02P019C04P019C101F1_033.ab1   714 
Contig length: old 911, new 911

Contig length: old 911, new 912
New start: 0 
I Change at: 858; seg lengths: entry 1, contig 0