No. words: 1731; after pruning: 1691


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.6 (1,1:722)  698  0.28 0.42 0.00  MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1        1   719 (146)  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   (141)   725     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   866 
  172    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1    28 
  184  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   683 
  196    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1    52 
  212  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   655 
  216    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1    72 
  240  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   627 
  264    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   120 
  276  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   591 
  296    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   152 
  308  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   559 
  336    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   192 
  340  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   527 
  368    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   224 
  380  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   487 
  472    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   328 
  476  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   391 
  552    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   408 
  556  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   311 
  572    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   428 
  580  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1   287 
  777    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   633 
  781  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1    86 
  793    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   649 
  797  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1    70 
  809    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   665 
  824  C MoSU035R_B06_BE495325Ld04P019C04P019C101R1_046.ab1    43 
  848    MoSU035F_B06_BE495325Ld04P019C04P019C101F1_046.ab1   704 
Contig length: old 1008, new 1009

Contig length: old 1009, new 1009
New start: 0