No. words: 1543; after pruning: 1517


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.7 (1,1:718)  667  0.15 0.00 0.00  MoSU035F_D06_BE495325Ld06P019C04P019C101F1_042.ab1        2   680 (0)  C MoSU035R_D06_BE495325Ld06P019C04P019C101R1_042.ab1   (145)   718    40 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C MoSU035R_D06_BE495325Ld06P019C04P019C101R1_042.ab1   863 
  197    MoSU035F_D06_BE495325Ld06P019C04P019C101F1_042.ab1    53 
  453  C MoSU035R_D06_BE495325Ld06P019C04P019C101R1_042.ab1   411 
  473    MoSU035F_D06_BE495325Ld06P019C04P019C101F1_042.ab1   329 
  477  C MoSU035R_D06_BE495325Ld06P019C04P019C101R1_042.ab1   387 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0