No. words: 1303; after pruning: 1277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.6 (1,1:687)  587  0.98 0.00 0.00  MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1       19   632 (0)  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   (1)   670    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1     1 
  264  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   425 
  268    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   268 
  288  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   401 
  300    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   300 
  304  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   385 
  320    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   320 
  332  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   357 
  336    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   336 
  340  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   349 
  360    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   360 
  364  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   325 
  380    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   380 
  388  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   301 
  400    MoSU035F_E06_BE495325Ld07P019C04P019C101F1_040.ab1   400 
  408  C MoSU035R_E06_BE495325Ld07P019C04P019C101R1_040.ab1   281 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0