No. words: 1450; after pruning: 1424


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:710)  663  0.56 0.42 0.42  MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1        1   708 (0)  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   (29)   713     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   742 
   56    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1    24 
   80  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   663 
   84    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1    52 
  236  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   507 
  240    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   208 
  296  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   447 
  300    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   268 
  308  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   435 
  320    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   288 
  324  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   419 
  328    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   296 
  336  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   407 
  348    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   316 
  368  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   375 
  380    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   348 
  396  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   347 
  420    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   388 
  428  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   315 
  432    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   400 
  444  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   299 
  456    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   424 
  464  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   279 
  596    MoSU035F_F06_BE495325Ld08P019C04P019C101F1_038.ab1   564 
  600  C MoSU035R_F06_BE495325Ld08P019C04P019C101R1_038.ab1   143 
Contig length: old 742, new 742

Contig length: old 742, new 741
New start: 0 
D Change at: 42; seg lengths: entry 1, contig 2