No. words: 1532; after pruning: 1478


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:722)  623  0.76 0.46 0.00  MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1        1   659 (0)  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   (148)   725    64 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   873 
  175    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1    24 
  191  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   683 
  200    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1    49 
  212  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   662 
  216    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1    65 
  232  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   642 
  240    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1    89 
  252  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   622 
  260    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   109 
  264  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   610 
  268    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   117 
  292  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   582 
  300    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   149 
  312  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   562 
  316    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   165 
  320  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   554 
  336    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   185 
  340  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   534 
  344    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   193 
  352  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   522 
  356    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   205 
  364  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   510 
  368    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   217 
  388  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   486 
  396    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   245 
  416  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   458 
  476    MoSU035F_H06_BE495325Ld10P019C04P019C101F1_034.ab1   325 
  480  C MoSU035R_H06_BE495325Ld10P019C04P019C101R1_034.ab1   394 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0 
S Change at: 112; seg lengths: entry 1, contig 1
S Change at: 821; seg lengths: entry 1, contig 1