No. words: 1398; after pruning: 1358


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:701)  636  0.30 0.30 0.00  MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1        1   656 (0)  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   (39)   703    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   742 
   66    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1    25 
   70  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   673 
   74    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1    33 
   78  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   665 
   91    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1    50 
  119  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   624 
  159    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   118 
  163  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   580 
  175    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   134 
  183  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   560 
  191    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   150 
  199  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   544 
  211    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   170 
  215  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   528 
  231    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   190 
  243  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   500 
  251    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   210 
  255  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   488 
  351    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   310 
  355  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   388 
  363    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   322 
  371  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   372 
  447    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   406 
  451  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   292 
  519    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   478 
  527  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   216 
  539    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   498 
  551  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   192 
  563    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   522 
  567  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   176 
  587    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   546 
  591  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   152 
  599    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   558 
  603  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1   140 
  683    MoSU035F_A05_BE495325Tu01P019C04P019C101F1_047.ab1   642 
  687  C MoSU035R_A05_BE495325Tu01P019C04P019C101R1_047.ab1    56 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0