No. words: 1468; after pruning: 1414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:668)  651  0.15 0.30 0.00  MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1        1   668 (94)  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   (36)   670     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   706 
   66    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1    28 
   74  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   633 
   98    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1    60 
  118  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   589 
  130    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1    92 
  134  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   573 
  174    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   136 
  178  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   529 
  210    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   172 
  214  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   493 
  230    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   192 
  238  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   469 
  254    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   216 
  274  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   433 
  282    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   244 
  290  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   417 
  366    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   328 
  382  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   325 
  446    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   408 
  454  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   253 
  542    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   504 
  554  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   153 
  558    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   520 
  578  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   129 
  590    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   552 
  594  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   113 
  598    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   560 
  602  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1   105 
  638    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   600 
  642  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1    65 
  667    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   629 
  679  C MoSU035R_B05_BE495325Tu02P019C04P019C101R1_045.ab1    28 
  683    MoSU035F_B05_BE495325Tu02P019C04P019C101F1_045.ab1   645 
Contig length: old 799, new 800

Contig length: old 800, new 800
New start: 0 
S Change at: 718; seg lengths: entry 1, contig 1