No. words: 453; after pruning: 427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.4 (1,1:173)  156  0.00 0.58 1.17  MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1        4   174 (61)  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1   (48)   170     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1   218 
  123    MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1    79 
  135  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1    84 
  155    MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1   111 
  163  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1    56 
  167    MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1   123 
  175  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1    44 
  179    MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1   135 
  187  C MoSU030R_A09_BE495400Ta17P024G02P005H101R1_079.ab1    32 
  191    MoSU030F_A09_BE495400Ta17P024G02P005H101F1_079.ab1   147 
Contig length: old 279, new 279

Contig length: old 279, new 279
New start: 0