No. words: 1631; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:1333)  292  0.00 0.00 0.00  MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1      514   810 (0)  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   (0)   821   525 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1    MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1     1 
  625  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   710 
  629    MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1   629 
  641  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   694 
  645    MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1   645 
  669  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   666 
  673    MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1   673 
  677  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   658 
  685    MoSU013F_E05_BE496863At01P018C01P018C071F1_039.ab1   685 
  689  C MoSU013R_E05_BE496863At01P018C01P018C071R1_039.ab1   646 
Contig length: old 1334, new 1334

Contig length: old 1334, new 1334
New start: 0