No. words: 1527; after pruning: 1501


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.1 (1,1:1321)  198  0.00 0.00 0.00  MoSU013F_A05_BE496863Tu01P018C01P018C071F1_047.ab1      586   788 (2)  C MoSU013R_A05_BE496863Tu01P018C01P018C071R1_047.ab1   (0)   737   535 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1    MoSU013F_A05_BE496863Tu01P018C01P018C071F1_047.ab1     1 
  601  C MoSU013R_A05_BE496863Tu01P018C01P018C071R1_047.ab1   722 
  605    MoSU013F_A05_BE496863Tu01P018C01P018C071F1_047.ab1   605 
  617  C MoSU013R_A05_BE496863Tu01P018C01P018C071R1_047.ab1   706 
  621    MoSU013F_A05_BE496863Tu01P018C01P018C071F1_047.ab1   621 
  657  C MoSU013R_A05_BE496863Tu01P018C01P018C071R1_047.ab1   666 
  661    MoSU013F_A05_BE496863Tu01P018C01P018C071F1_047.ab1   661 
  669  C MoSU013R_A05_BE496863Tu01P018C01P018C071R1_047.ab1   654 
Contig length: old 1322, new 1322

Contig length: old 1322, new 1322
New start: 0